| 201 |
A Comparison of Liquid and Gas States (A 1-page study for advanced students) |
Yes |
| 19 |
A Reverse Micelle
(a 1-page model exploration for advanced students) |
Yes |
| 198 |
Activation Energy (1-page introduction) |
Yes |
| 239 |
Active Filters (demo) |
Yes |
| 272 |
Air Filtration (1-page introduction) |
Yes |
| 206 |
Alignment of Polar Molecules with/without an External Field (1-page activity) |
Yes |
| 160 |
Amino Acids and Water: 20 Alanine Model (4 connected model pages) |
Yes |
| 248 |
Amplification of Biochemical Signals: the ELISA Test (an 8-page activity for technical students) |
Yes |
| 25 |
Aquatic Solutions and Our Cells (Five-day unit) |
No |
| 277 |
Atomic Layer Deposition (A 1-page experiment) |
Yes |
| 275 |
Atomic Mass and Melting Point (1-page exploration) |
Yes |
| 47 |
Atomic Structure (SAM)
(9-page, 2-day activity) |
Yes |
| 310 |
Atoms and Conservation of Energy (SAM)
(9-page activity) |
Yes |
| 63 |
Attractive Forces and Phase Change: (formerly Atoms in Motion)
4-pp activity |
No |
| 40 |
Brownian Motion
(a 4 pp activity) |
Yes |
| 197 |
Catalysis: Three conditions
(One of three interlinked model pages on the role of catalysis) |
Yes |
| 72 |
Cell Membranes: Diffusion and Osmosis
(1-p exploration; interactive, Flash) |
No |
| 43 |
Charge-Dipole Interaction
(A 1-page exploration) |
Yes |
| 24 |
Chemical Equilibrium (1-page activity) |
Yes |
| 193 |
Chemical Equilibrium and Le Chatelier's Principle
(a 4 pp, one-day activity) |
Yes |
| 192 |
Chemical Potential Energy and Phase Change
(a 3 pp exploration) |
Yes |
| 44 |
Chemical Reaction Kinetics: Dissociation and Recombination of Diatomic Molecules (a 1-page exploration) |
Yes |
| 278 |
Chemical Reactions (interactive essay by Charles Xie) |
Yes |
| 301 |
Chemical Reactions and Stoichiometry (SAM)
(a 2-day activity) |
Yes |
| 214 |
Chemical Reactions: A + A to A2
(interactive Flash model) |
No |
| 216 |
Chemical Reactions: A2 + B To 2A and B
(interactive Flash model) |
No |
| 215 |
Chemical Reactions: A2 plus B2 to 2AB
(interactive Flash model) |
No |
| 259 |
Chromatography (a multi-page technical education activity) |
No |
| 241 |
Counting Reactants and Products
(a one-page interactive model) |
Yes |
| 263 |
Crystals: Closely Packed Metals (a 1 page model in 3D) |
Yes |
| 246 |
Density and Buoyancy with Centrifugation
(a 3 pp activity with technical application) |
Yes |
| 181 |
Density and Buoyancy: How Do Whales Sink So Deep?
(Flash interactive model) |
No |
| 285 |
Designer Proteins
(A 5-page activity) |
Yes |
| 288 |
Diffusion Assessment (test) |
Yes |
| 321 |
Diffusion, Osmosis, and Active Transport (SAM)
(a 2-day activity) |
Yes |
| 223 |
Diffusion, Osmosis, and Dialysis
(a 5pp activity) |
Yes |
| 186 |
Dissolving
(an early 9 pp activity) |
No |
| 55 |
Dissolving Salt in Water (template model) |
Yes |
| 237 |
Dissolving Salt in Water: Teacher-contributed variant |
Yes |
| 274 |
Distillation and the Role of Weak Forces
(a 4 pp activity) |
Yes |
| 265 |
DNA Hybridization (Plain Model) |
Yes |
| 244 |
DNA Hybridization with Southern Blot
(a 5 pp activity for biotechnology students) |
Yes |
| 273 |
DNA to Protein Animation
(an animation with some interactivity) |
No |
| 245 |
DNA to Protein Synthesis
(a 6 pp introduction) |
Yes |
| 315 |
DNA to Proteins (SAM)
(a 2-day activity; 11 pp) |
Yes |
| 154 |
Docking: Binding of Complementary Surfaces
(a 2 pp introduction to surfaces) |
Yes |
| 299 |
Drug Design: Protein Kinases
(a 6 pp activity for biotechnology students) |
No |
| 213 |
Effect of Charges on Folding: A Strongly Polar Conformation |
Yes |
| 209 |
Effect of Charges on Folding: An Alternately Charged Conformation |
Yes |
| 166 |
Effusion of Gas Molecules
(a 1 page demonstration model) |
Yes |
| 59 |
Elastic Collision between Two Particles
(a 1-page demonstration model) |
Yes |
| 318 |
Electric Current (SAM)
(a 2-day, 10 pp activity) |
Yes |
| 294 |
Electrical Generators
(a one page demonstration) |
Yes |
| 199 |
Electrophoresis, with SDS Page
(an 7-page activity for biotechnology) |
No |
| 157 |
Electrostatic Self-Assembly (demo) |
Yes |
| 317 |
Electrostatics (SAM)
(a 7 pp activity for 1-2 class periods) |
Yes |
| 60 |
Energy Conservation in Chemical Reactions
(A 1-page demonstration) |
Yes |
| 293 |
Energy Games: Energy and Force Among Atoms
(10 pp of energy exercises) |
Yes |
| 113 |
Equilibrium Position of Chemical Reactions
(a one-page interactive model) |
Yes |
| 316 |
Excited States and Photons (SAM)
(12 pp for 2 days) |
Yes |
| 21 |
Experiment on an All-Hydrophilic Polypeptide
(an interrelated set of 4 models) |
Yes |
| 54 |
Exploring Ionic Compounds (Salt)
(a 5 pp activity) |
No |
| 62 |
Explosion
(5 interlinked models) |
Yes |
| 174 |
Fields: The movement of a Charged Particle in Three Fields
A 1-page model exploration by Charles Xie) |
Yes |
| 177 |
Finding the Nucleus of a Helium Atom (see "Important Notice!")
(A very short activity) |
No |
| 256 |
Fluorescence: Molecular Tagging
(a 6 pp activity for biotechnology students) |
Yes |
| 66 |
Formation of Water Shells around Ions
(a 1-page highly interactive model) |
Yes |
| 322 |
Four Levels of Protein Structure (SAM)
(a 9-page 1-2 day activity) |
Yes |
| 134 |
Free Radicals: Their Role in Chemical Reactions
(a 1 page comparison study) |
Yes |
| 324 |
From DNA to Proteins and Protein Folding (MIT Museum Exhibit) |
Yes |
| 97 |
From Monomers to Polymers (Three-activity module)
|
Yes |
| 28 |
Gas Diffusion: On Your Marks, Get Set, Go! (Windows only) |
No |
| 270 |
Gas Effusion in a Two-Compartment Container
(1 page interactive model) |
Yes |
| 323 |
Gas Laws (SAM)
(an 8 pp 1 or 2 day activity) |
Yes |
| 29 |
Gas Laws: Pressure
(a 2-day activity) |
No |
| 264 |
Gas Molecules in a Box (3D dynamics) |
Yes |
| 73 |
Graphite: Chemical Bond Network
(a single model with some interactivity) |
Yes |
| 308 |
Heat and Temperature (SAM)
A 2-day activity |
Yes |
| 74 |
Heat and Temperature (Windows only) |
Yes |
| 292 |
Heat Flow (Monday's Lesson)
(a 4-page activity) |
Yes |
| 52 |
Heat of Vaporization (with Latent Heat)
(1 page in 3-page activity on Exploring Potential Energy in Phase Changes) |
Yes |
| 232 |
Heat Propagation
(a 1-page exploration) |
Yes |
| 267 |
Heat Propagation/Transfer 2
(A 1-page model exploration) |
Yes |
| 313 |
Hemoglobin (ROVER)
(an advanced activity in 3D) |
Yes |
| 281 |
Hemoglobin Tour
(a 2-page interactive exploration) |
Yes |
| 195 |
HIV Virus (demo model) |
Yes |
| 76 |
How a Protein Gets Its Shape: The Role of Charge |
Yes |
| 78 |
How Do Mass and Inertia Affect Molecular Motion? |
Yes |
| 212 |
Hydrophilicity (demo - set of linked models) |
Yes |
| 203 |
Hydrophobia (demo - set of linked models) |
Yes |
| 207 |
Hydrophobic Collapse (PROBLEM/Delete?) |
Yes |
| 227 |
Intermolecular Forces (SAM)
(a 2-class activity) |
Yes |
| 152 |
Introduction to BioLogica |
No |
| 284 |
Introduction to Crystals
(an 8-page, 1-2 class activity) |
Yes |
| 298 |
Introduction to Modeling (SAM)
(a 7 page activity) |
Yes |
| 287 |
Introduction to Molecular Dynamics Models
(7-page original Introduction to MW) |
Yes |
| 81 |
Ion Transport in an Electric Field
(interactive demo) |
Yes |
| 204 |
Ionic Bonds and Their Effect on Molecular Structure
(interactive 1-page model) |
Yes |
| 269 |
Kinetic Energy Equipartition
(1-page demo model) |
Yes |
| 170 |
Latent Heat
(Single model with graph. Model and scripts by Prof. Arie Aziman and Carlos Cardena, modified from an original model by Dan Damelin) |
Yes |
| 283 |
Light and Matter Interactions (An 8-page activity originally by Concord MW team, modified by Ed O'Sullivan, Parkland College) |
Yes |
| 131 |
Light-Matter Interaction Part I: Photons (Template) |
Yes |
| 319 |
Lipids and Carbohydrates (SAM)
A 2-day 11-page activity |
Yes |
| 253 |
Liquid Crystals: LCD Displays
(a 6-page activity for community college students by Dan Damelin) |
No |
| 171 |
Liquid Crystals: the Mesophase between Solids and Liquids
(a 1-p model exploration by Charles Xie) |
Yes |
| 176 |
Mass and Molecular Motion
(A 2-model 1-page exploration) |
Yes |
| 85 |
Mass Spectroscopy
(a 5-page activity for advanced technical students) |
No |
| 266 |
Maxwell Speed and Velocity Distributions
(3-interconnected 1-page models) |
Yes |
| 86 |
Meiosis |
No |
| 87 |
Melittin Protein
(a sample protein model) |
Yes |
| 314 |
Mission Immunity
(a 3D, 5-page activity, from the Rover project) |
Yes |
| 219 |
Modeling a Gas: Thermal Equilibrium (5-page activity, 1-page has a problem) |
No |
| 291 |
Models of the Atom's Electron Orbitals (see "Important Notice!"; ) |
No |
| 280 |
Molecular Crystals
(7-page activity) |
Yes |
| 262 |
Molecular Dynamics Simulation of Sodium Chloride (1 page interactive model in 3D) |
Yes |
| 302 |
Molecular Geometry: (SAM) 11-page, 2-day activity |
Yes |
| 217 |
Molecular Sieve (1-page model) |
Yes |
| 94 |
Molecules with Aromatic Rings (1-page model with temperature control) |
Yes |
| 102 |
Mutations: Changing the Genetic Code
(a 7-page activity) |
Yes |
| 276 |
Nanomachines
(a 5-page activity) |
Yes |
| 309 |
Newton's Laws at the Atomic Level (SAM)
(a 2-day, 9-page activity) |
Yes |
| 312 |
NSTA 2008: Creating learning activities using the Molecular Workbench |
No |
| 106 |
Observing Newton's 3rd Law in a Molecular Dynamics Simulation (a 1-page model) |
Yes |
| 233 |
Osmosis (A single interactive Flash model) |
No |
| 23 |
Osmosis and Osmotic Pressure
(a simple model in 1-page with interactivity) |
Yes |
| 305 |
Phase Change
(2-day, 9-page activity from the SAM project) |
Yes |
| 180 |
Phase Change (a multi-page activity) |
No |
| 178 |
Phase Separation
(a single interactive model) |
Yes |
| 279 |
Piezoelectric Effect
(a single model for advanced students) |
Yes |
| 187 |
Point Defects in Crystals (2-page activity) |
Yes |
| 282 |
Polymerization (7 pp activity for advanced students) |
Yes |
| 163 |
Polymerization: Step Growth (model only) |
Yes |
| 108 |
Potential Energy Curves and Activation Energy
(5-page activity) |
Yes |
| 110 |
Potential Energy in Covalent Bond Formation
(a 5-page activity) |
Yes |
| 300 |
Protein Conservation: A View into Proteomics
(a 6-page activity) |
Yes |
| 225 |
Protein Folding (8-page activity; a "Stepping Stone" of MoLo project) |
Yes |
| 156 |
Protein Substrate Docking (3-interlinked pages of related demonstration models) |
Yes |
| 261 |
Protein Synthesis (Template Model) |
Yes |
| 320 |
Proteins and Nucleic Acids (SAM)
(a 12-page, 2-day activity from the SAM project) |
Yes |
| 56 |
Reaction Rate and Concentration
(a 3-day activity) |
Yes |
| 247 |
Reaction Rates, Catalysis, and Pasteurization
(8-page activity) |
Yes |
| 115 |
Self-alignment of dipole moments and alignment in external field
(a 1-page model exploration) |
Yes |
| 155 |
Self-Assembly (Demo model) |
Yes |
| 295 |
Self-Assembly 2: Complementarity of Molecular Shapes
(a 5-page activity)
|
No |
| 200 |
Self-Assembly and Orientation
(a 4-page set of models for comparison) |
Yes |
| 231 |
Self-Assembly with Nanomanufacturing
(a 9-page activity) |
Yes |
| 158 |
Simulating Primitive Life: Nanoworms
(a 1-page demonstration model) |
Yes |
| 188 |
Solids, Liquids, and Gases
(6-page activity)
|
No |
| 210 |
Solvation of Polar Molecules
(a 1-page model for exploration) |
Yes |
| 220 |
Spatial Equilibrium: Modeling a Gas
(erratic) |
No |
| 304 |
Spectroscopy (SAM)
(an 8-page, 1-2 day activity) |
Yes |
| 127 |
States of Matter (week-long unit) |
No |
| 144 |
States of Matter Basics:
Interatomic interactions: Towards state of matter (I) and (II)
|
Yes |
| 146 |
States of Matter Basics: Comparison of liquid and solid |
Yes |
| 235 |
Strong Chemical Bonds (SAM)
(a 2-day, 10-page activity) |
Yes |
| 236 |
Structure of Proteins: Insulin
(a 7-page activity) |
Yes |
| 130 |
Superballs are Like Atoms
(8-page activity) |
Yes |
| 260 |
Template-Based Synthesis: PCR |
No |
| 132 |
The Effect of Structures and Subforces on Protein Conformation |
Yes |
| 172 |
The Relationship Between Interaction Strength and Melting Point |
Yes |
| 226 |
The Tree of Life's Macromolecules
(multi-page interlinked activity) |
Yes |
| 139 |
Two Atoms in a Box: Collisions and transfer of energy (a multi-page activity) |
No |
| 290 |
Visualizing Beginning Molecular Ideas (a TEST) |
Yes |
| 202 |
Water Molecules (a 1-page model) |
Yes |
| 140 |
Water: Getting to Know the Water Molecule (a 7-page activity) |
No |
| 271 |
X-ray Crystallography (a 13-page activity for advanced students) |
Yes |
| 311 |
Zoom It - A Sense of Scale (a powers-of-ten tool) |
Yes |
